Commits · master · BioScience / annotosis · GitLab

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Jan 31, 2022
- Added python v3.9 to environment · 53985c88
  Pasi Korhonen authored 3 years ago
  
  53985c88
Aug 23, 2021
- Edits for the publication ... · e145253c
  Pasi Korhonen authored 3 years ago
  
  View commits for tag v0.0.1-publication v0.0.1-publication
  
  e145253c
- Edits for the publication ... · 611b130a
  Pasi Korhonen authored 3 years ago
  
  611b130a
- Edits for the publication ... · 2a670ab8
  Pasi Korhonen authored 3 years ago
  
  2a670ab8
Jun 24, 2021
- Adjusting conda environment · 01b935ad
  Pasi Korhonen authored 3 years ago
  
  01b935ad
- Adjusting conda environment · af2ac2ae
  Pasi Korhonen authored 3 years ago
  
  af2ac2ae
- Adjusting conda environment · 9db38501
  Pasi Korhonen authored 3 years ago
  
  9db38501
- Fixed potential crash site on removal of an index file. · 2424fded
  Pasi Korhonen authored 3 years ago
  
  2424fded
Jun 23, 2021
- Added installation of pip · ce1144a2
  Pasi Korhonen authored 3 years ago
  
  ce1144a2
Jun 09, 2021
- Added container for GeneValidator. · ec726fae
  Pasi Korhonen authored 3 years ago
  
  ec726fae
- Added fixes and improvements to the validator workflow. · be49b87d
  Pasi Korhonen authored 3 years ago
  
  be49b87d
- Added fixes and improvements to the validator workflow. · 550cdb06
  Pasi Korhonen authored 3 years ago
  
  550cdb06
Jun 08, 2021
- Added gene validation pipeline. · 0af37883
  Pasi Korhonen authored 3 years ago
  
  0af37883
- Remove Validator directory. · cf15daed
  Pasi Korhonen authored 3 years ago
  
  cf15daed
- Pipeline to estimate the quality of the predicted genes. · f4d87af5
  Pasi Korhonen authored 3 years ago
  
  f4d87af5
May 31, 2021
- Improving conda environment for Trinity. · 9bec9808
  Pasi Korhonen authored 3 years ago
  
  9bec9808
May 07, 2021
- Missing scripts added ... · 97ee13ea
  Pasi Korhonen authored 3 years ago
  
  97ee13ea
- Cleaning up some files ... · e71ae6f9
  Pasi Korhonen authored 3 years ago
  
  e71ae6f9
May 06, 2021
- Added parallelisation to exonerate step ... · 13b2843b
  Pasi Korhonen authored 3 years ago
  
  13b2843b
Mar 02, 2021
- Fixing stringtie integration ... · e5341fba
  Pasi Korhonen authored 4 years ago
  
  e5341fba
Feb 15, 2021
- Fixed a bug in stringtie integration. · 083d15f5
  Pasi Korhonen authored 4 years ago
  
  083d15f5
Feb 11, 2021
- Added configuration support for evidence data. · d9323311
  Pasi Korhonen authored 4 years ago
  
  d9323311
- Version updates in install scripts. · d76f87ef
  Pasi Korhonen authored 4 years ago
  
  d76f87ef
- Version updates in install scripts. · 0335eacd
  Pasi Korhonen authored 4 years ago
  
  0335eacd
- Added configuration support for evidence data. · 07c5654d
  Pasi Korhonen authored 4 years ago
  
  07c5654d
Feb 10, 2021
- Support for merged StringTie evidence added. · ea1ea986
  Pasi Korhonen authored 4 years ago
  
  ea1ea986
Feb 08, 2021
- Fixed typo in long read integration. · 132de88d
  Pasi Korhonen authored 4 years ago
  
  132de88d
- Fixed a bug to integrate SwissProt database. · b5b38782
  Pasi Korhonen authored 4 years ago
  
  b5b38782
Feb 03, 2021
- Snakefile moved to GenePrediction · e8b69b63
  Pasi Korhonen authored 4 years ago
  
  e8b69b63
- Removed conflicting .smk file · 266f6dc2
  Pasi Korhonen authored 4 years ago
  
  266f6dc2
- Removed conflicting .smk file · 94a76ede
  Pasi Korhonen authored 4 years ago
  
  94a76ede
- Merge branch 'master' of https://gitlab.unimelb.edu.au/vetscience/helminth-gene-prediction-pipeline · 13b24cdf
  Andreas Stroehlein authored 4 years ago
  
  13b24cdf
- Improved README file · 85e1d770
  Pasi Korhonen authored 4 years ago
  
  85e1d770
- Fixed issue with fasta header in createTrainingSet.py · 8df0d52f
  Andreas Stroehlein authored 4 years ago
  
  8df0d52f
- fix typos for long read files · 5be05993
  Andreas Stroehlein authored 4 years ago
  
  5be05993
Feb 02, 2021
- Long reads support as hints added · 1c0e01a6
  Pasi Korhonen authored 4 years ago
  
  1c0e01a6
- Long reads support as hints added · 44827233
  Pasi Korhonen authored 4 years ago
  
  44827233
- Long reads support as hints added · ed6ad512
  Pasi Korhonen authored 4 years ago
  
  ed6ad512
- Long reads support as hints added · 9ef3a584
  Pasi Korhonen authored 4 years ago
  
  9ef3a584
- Added conda-forge to channels · b67a4820
  Pasi Korhonen authored 4 years ago
  
  b67a4820