Explore projects

Modelling genomes to transcriptomes to proteomes to phenomes networks

A suite of Python, R and Bash scripts for simulating RADseq/GBS for pooled GWAS, TWAS and GTWAS

3D Points Volume Estimation is a Python workflow to create a 3D volume that estimates the spread of points. In this specific instance, it was used to visualize and quantify the dendritic volume of preganglionic neurons in the lumbosacral spinal cord based on the spread of cholera toxin subunit B (CTB) within the neuron.

tester

A constantly WIP comparison of samplers (nested, MCMC, etc.) which will evolve depending on the task at hand...

scripts for the automation of I-V sensors testing

GapMaster scaffolds given contigs based on reference genome(s) and closes the resultant gaps that can be fully validated using either PacBio or Nanopore long reads.

HUHUHUHUH MK AND KB MACABRE GET IT GET IT

Code snippets for the Cloud Computing course

project 1 for computer system

Software for running the robot that is the focus of the Autonomous Systems Clinic subject.

ChIP-seq analysis for dunnart (Sminthopsis crassicaudata) craniofacial tissue for H3K4me3 and H3K27ac with cross-species analyses with mouse.